PreSSAPro


Output Form

Protein name: PrP mouse

Seq: VVGGLGGYML GSAMSRPMIH FGNDWEDRYY RENMYRYPNQ VYYRPVDQYS 50
Pred1: cccccccccc cchhhcceee cccchhhhee hhhhhhcccc eeeccchhhc
Pred2: ccccccceee cchhhcccee cccchhhhhh hhchhhccce eeeecchhhh
Pred3: cccccccccc cchhhcceee cccchhhhhh hhhhhhccce eeeecccchc
Pred4: cccccccccc cchhhcccee cccchhhhee hhhheeccce eeeccceeec
Seq: NQNNFVHDCV NITIKQHTVT TTTKGENFTE TDVKMMERVV EQMCVTQYQK 100
Pred1: cccceeeccc eeeehhheee eeeccccchh hhhhhhhhee hhhhchhhhh
Pred2: cccceeeeee eeeeeeeeee eeccccchhh chhhhhhhhh eeeeceehhh
Pred3: cccceeeeee eeeeeeeeee eecccccccc hhhhhchhhh eeehehehhh
Pred4: cccceeecee eeeeecceee eeeccccccc chhhhhhhee hhheeehhhh
Seq: ESQAYYDGRR SS 112
Pred1: hhhheecccc cc
Pred2: hhhhhhcccc cc
Pred3: hhhhhhcccc cc
Pred4: hhhheecccc cc


Pred1 is the secondary structure prediction obtained using the amino acid propensities calculated for all-alpha proteins.
Pred2 is the secondary structure prediction obtained using the amino acid propensities calculated for all-beta proteins.
Pred3 is the secondary structure prediction obtained using the amino acid propensities calculated for alpha-beta proteins.
Pred4 is the secondary structure prediction obtained using the amino acid propensities calculated for all proteins reported in PDBselect.