BIOINFORMATIC TOOLS FOR MICROARRAYS TECHNOLOGY

This page reports a list of useful links for the surfers interested in microarrays technology and bioinformatics.

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Institutions

EBI - European Bioinformatics Institute
NCBI - National Center for Biotechnological Information
EMBL - European Molecular Biology Laboratory
Sanger Institute
Kyoto University Bioinformatics Center
TIGR - The Institute for Genomic Research

Specific Organizations and Projects

Microarray Gene Expression Data (MGED) Society
The Ensembl project
The SNP Consortium
Bioconductor project
Association for Pathology Informatics

Data Bases of genes and genomes information

GenAtlas
GDB Human Genome Database
GeneCards
GeneLynx - A portal to mammalian genomes
EMBL Nucleotide sequence database
GeneBank database
DNA data bank of Japan
EST - Expressed Sequence Tags database
HUGE - Human Unidentified Gene-Encoded Large Proteins
Human Gene Mutation Database
Oncomine Cancer Profiling Database

Microarray experiments databases

ArrayExpress - a public repository for microarray data
GEO Gene Expression Omnibus
SymAtlas
PEPR - Public Expression Profiling Resource
Stanford Microarray Database
Yale Microarray Database

Microarrays resources (software, protocols and other)

The Microarrays Facility at Sanger Institute
Stanford Genomic Resources
Pat Brown's lab homepage
TIGR Microarray Research
BioArray Software Environment - BASE
Eisens lab
GenMAPP visualization of gene expression
Significance Analysis of Microarrays

microRNA resources

UTResource
miRBASE
The microRNA of the Memorial Sloan-Kettering Cancer Center
miRanda: microRNA Target Detection
TargetScan
PicTar
Target Gene Prediction
RNAhybrid
TAR Base DB of microRNA targets

Other microarrays technologies

Protein Arrays Resource Page
Stanford Tissue Microarray Consortium